☰ Navigation Tabs
Solution NMR structure of the N-terminal domain of CEP164 (1-109)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N BEST-TROSY 120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE III HD 800 2 2D 1H-13C HSQC aliphatic 120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE III HD 800 3 3D HN(CA)CO 120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE II 700 4 3D HNCACB 120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE II 700 5 2D 1H-1H NOESY 500 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE III HD 800 6 2D (HB)CB(CGCD)HD 120 uM [U-10% 13C; U-100% 15N] CEP164 (1-109), 25 mM sodium phosphate, 125 mM sodium chloride, 4 mM DTT, 0.4 % complete protease inhibotor cocktail, EDTA free 95% H2O/5% D2O 185 mM 7.4 1 atm 293 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE II 700 3 Bruker AVANCE III HD 800
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 processing TopSpin 3.2 Bruker Biospin 3 chemical shift assignment NMRFAM-SPARKY 1.3 NMRFAM 4 structure calculation X-PLOR NIH 2.28 Schwieters, Kuszewski, Tjandra and Clore 5 structure calculation Amber 11 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 6 data analysis TALOS+ 3.80F1 Rev 2012.080.14.41 Shen, Delaglio, Cormilescu and Bax