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WILDTYPE CORE-STREPTAVIDIN WITH a conjugated BIOTINYLATED PYRROLIDINE II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GH7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 25 mg/mL protein in deionised water is mixed at equal volume with 52% MPD.
Crystal Properties Matthews coefficient Solvent content 2.14 42.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.32 α = 90 b = 97.6 β = 110.26 c = 50.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2018-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.915870 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 46.27 99.5 0.052 0.073 0.052 0.994 7.3 1.9 112641
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.31 0.49 0.694 0.49 0.596 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6GH7 1.29 46.27 112639 5708 99.405 0.209 0.2074 0.2109 0.2471 0.2402 23.217
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.684 2.78 -2.086 -0.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.655 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_3_deg 11.277 r_rigid_bond_restr 10.371 r_dihedral_angle_1_deg 8.329 r_lrange_it 4.16 r_lrange_other 3.998 r_scangle_it 3.38 r_scangle_other 3.38 r_mcangle_other 3.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.655 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_3_deg 11.277 r_rigid_bond_restr 10.371 r_dihedral_angle_1_deg 8.329 r_lrange_it 4.16 r_lrange_other 3.998 r_scangle_it 3.38 r_scangle_other 3.38 r_mcangle_other 3.107 r_mcangle_it 3.095 r_scbond_it 2.841 r_scbond_other 2.841 r_mcbond_it 2.623 r_mcbond_other 2.578 r_angle_refined_deg 1.603 r_angle_other_deg 1.517 r_chiral_restr_other 0.339 r_symmetry_nbd_other 0.203 r_nbd_refined 0.18 r_nbd_other 0.173 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.169 r_symmetry_nbd_refined 0.161 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.07 r_xyhbond_nbd_other 0.06 r_symmetry_xyhbond_nbd_other 0.028 r_bond_refined_d 0.01 r_bond_other_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3537 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 84
Software Software Software Name Purpose Aimless data reduction REFMAC refinement xia2 data scaling MOLREP phasing Coot model building