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Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7957
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TJM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.3 uL of 8 mg/ml FAS-TE in 100 mM NaCl, 50 mM BisTris pH 6.0, 10 mM DTT, 0.5 mM of the inhibitor and 1% DMSO was mixed with 0.2 uL of well solution 10% PEG400, 50 mM Tris-Cl pH 8.5, 1.0 mM DTT, 1.0 mM Ethylenediaminetetraacetic acid disodium salt (EDTA), 300 mM NaCl.
Crystal Properties Matthews coefficient Solvent content 1.73 28.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.68 α = 90 b = 56.5 β = 90 c = 75.64 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.03316 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 45.3 90.7 0.2 5.2 4.6 5295
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 1.19 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TJM 2.8 37.849 5295 291 89.473 0.217 0.2132 0.2161 0.2836 0.2789 59.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.675 2.409 -5.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.607 r_dihedral_angle_3_deg 17.164 r_dihedral_angle_4_deg 14.832 r_lrange_it 11.22 r_lrange_other 11.22 r_dihedral_angle_1_deg 6.45 r_mcangle_it 5.342 r_mcangle_other 5.34 r_scangle_it 5.246 r_scangle_other 5.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.607 r_dihedral_angle_3_deg 17.164 r_dihedral_angle_4_deg 14.832 r_lrange_it 11.22 r_lrange_other 11.22 r_dihedral_angle_1_deg 6.45 r_mcangle_it 5.342 r_mcangle_other 5.34 r_scangle_it 5.246 r_scangle_other 5.245 r_mcbond_it 3.334 r_mcbond_other 3.333 r_scbond_it 3.123 r_scbond_other 3.122 r_angle_refined_deg 1.494 r_angle_other_deg 1.303 r_symmetry_xyhbond_nbd_refined 0.236 r_nbd_other 0.224 r_nbd_refined 0.217 r_symmetry_nbd_refined 0.215 r_symmetry_nbd_other 0.182 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.168 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.074 r_ext_dist_refined_d 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2165 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing