7MHE

Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) binding a competitive inhibitor SBP-7957


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.3 uL of 8 mg/ml FAS-TE in 100 mM NaCl, 50 mM BisTris pH 6.0, 10 mM DTT, 0.5 mM of the inhibitor and 1% DMSO was mixed with 0.2 uL of well solution 10% PEG400, 50 mM Tris-Cl pH 8.5, 1.0 mM DTT, 1.0 mM Ethylenediaminetetraacetic acid disodium salt (EDTA), 300 mM NaCl.
Crystal Properties
Matthews coefficientSolvent content
1.7328.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.68α = 90
b = 56.5β = 90
c = 75.64γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-21.03316SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.845.390.70.25.24.65295
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.91.191.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3TJM2.837.849529529189.4730.2170.21320.283659.85
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.6752.409-5.085
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.607
r_dihedral_angle_3_deg17.164
r_dihedral_angle_4_deg14.832
r_lrange_it11.22
r_lrange_other11.22
r_dihedral_angle_1_deg6.45
r_mcangle_it5.342
r_mcangle_other5.34
r_scangle_it5.246
r_scangle_other5.245
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.607
r_dihedral_angle_3_deg17.164
r_dihedral_angle_4_deg14.832
r_lrange_it11.22
r_lrange_other11.22
r_dihedral_angle_1_deg6.45
r_mcangle_it5.342
r_mcangle_other5.34
r_scangle_it5.246
r_scangle_other5.245
r_mcbond_it3.334
r_mcbond_other3.333
r_scbond_it3.123
r_scbond_other3.122
r_angle_refined_deg1.494
r_angle_other_deg1.303
r_symmetry_xyhbond_nbd_refined0.236
r_nbd_other0.224
r_nbd_refined0.217
r_symmetry_nbd_refined0.215
r_symmetry_nbd_other0.182
r_xyhbond_nbd_refined0.176
r_nbtor_refined0.168
r_symmetry_nbtor_other0.082
r_chiral_restr0.074
r_ext_dist_refined_d0.072
r_bond_refined_d0.008
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2165
Nucleic Acid Atoms
Solvent Atoms15
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing