7M1B

SusE-like protein BT2857


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529124% w/v PEG4000, 8.0% v/v ethylene glycol, 0.4 M magnesium chloride, 100 mM Tris:HCl, pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.2244.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.65α = 90
b = 48.79β = 103.602
c = 112.66γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-05-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08B1-10.97949CLSI08B1-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.540.599.90.0480.0210.9918.36.163258
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5899.90.4410.1930.9393.66.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEPDB entry 7M1A1.540.48763256316399.9130.2030.20070.236828.879
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.0980.473-2.2170.797
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.529
r_dihedral_angle_4_deg15.361
r_dihedral_angle_3_deg13.191
r_rigid_bond_restr9.606
r_dihedral_angle_1_deg6.948
r_scangle_it5.852
r_scbond_it5.764
r_lrange_it5.567
r_mcangle_it4.292
r_mcbond_it4.202
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.529
r_dihedral_angle_4_deg15.361
r_dihedral_angle_3_deg13.191
r_rigid_bond_restr9.606
r_dihedral_angle_1_deg6.948
r_scangle_it5.852
r_scbond_it5.764
r_lrange_it5.567
r_mcangle_it4.292
r_mcbond_it4.202
r_angle_refined_deg1.92
r_nbtor_refined0.314
r_xyhbond_nbd_refined0.258
r_nbd_refined0.205
r_chiral_restr0.148
r_symmetry_nbd_refined0.142
r_symmetry_xyhbond_nbd_refined0.131
r_gen_planes_refined0.018
r_bond_refined_d0.017
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2160
Nucleic Acid Atoms
Solvent Atoms229
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
SCALAdata scaling
PHASERphasing