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Structure of human CK2 alpha kinase (catalytic subunit) with the inhibitor 108600.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OWJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 100 mM Tris-HCl pH 7.5
200 mM ammonium sulfate
21% PEG5000
Crystal Properties Matthews coefficient Solvent content 1.99 38.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.348 α = 90 b = 45.981 β = 111.84 c = 63.683 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2011-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.98011 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 25 97.3 0.091 18.51 3.9 28233
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3OWJ 1.8 24.88 26802 1418 96.92 0.1754 0.1728 0.1728 0.2212 0.2213 RANDOM 34.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 -0.35 1.27 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.281 r_dihedral_angle_4_deg 21.235 r_dihedral_angle_3_deg 13.547 r_dihedral_angle_1_deg 6.248 r_angle_refined_deg 1.225 r_angle_other_deg 0.435 r_chiral_restr 0.065 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.281 r_dihedral_angle_4_deg 21.235 r_dihedral_angle_3_deg 13.547 r_dihedral_angle_1_deg 6.248 r_angle_refined_deg 1.225 r_angle_other_deg 0.435 r_chiral_restr 0.065 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2746 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing