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GAS41 YEATS domain in complex with 5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5VNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 277 0.1 M Tris, pH 7.3, 0.2 M magnesium chloride, 2.2 M sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.62 52.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.266 α = 90 b = 112.503 β = 116.743 c = 63.222 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2018-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97857 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 39.85 98.13 0.09119 0.1059 0.05365 0.994 11.74 3.9 42637 30.2473095888
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.101 2.176 0.48 0.5579 0.2831 0.809 2.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5VNA 2.10055713817 39.8491142852 1.37232259317 41865 2091 98.1065310618 0.210363055247 0.207500426097 0.2085 0.264217070077 0.2641 31.6552227129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.0565997429 f_angle_d 0.509104197978 f_chiral_restr 0.0478023033928 f_plane_restr 0.00244489702597 f_bond_d 0.00160844099545
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4089 Nucleic Acid Atoms Solvent Atoms 728 Heterogen Atoms 124
Software Software Software Name Purpose HKL-2000 data scaling PHENIX refinement MOLREP phasing