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Methanol-PQQ bound methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TQO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 291.15 Hepes, PEG600
Crystal Properties Matthews coefficient Solvent content 2.66 53.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.612 α = 90 b = 211.828 β = 90 c = 223.912 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 153 99.8 0.9 14.11 3.5 535098
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 0.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TQO 1.8 153 507193 27905 99.8 0.14 0.17 0.1718 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 40468 Nucleic Acid Atoms Solvent Atoms 5350 Heterogen Atoms 216
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing