7CE5 | pdb_00007ce5

Methanol-PQQ bound methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	V-set	e7ce5P1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
O	V-set	e7ce5O1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
L	V-set	e7ce5L1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
K	V-set	e7ce5K1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
J	V-set	e7ce5J1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
I	V-set	e7ce5I1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
F	V-set	e7ce5F1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
E	zf-CCHC	e7ce5E1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: zf-CCHC	ECOD (v294.2)
N	V-set	e7ce5N1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
M	V-set	e7ce5M1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
H	V-set	e7ce5H1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
G	V-set	e7ce5G1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
D	V-set	e7ce5D1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
C	V-set	e7ce5C1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
B	V-set	e7ce5B1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: V-set	ECOD (v294.2)
A	zf-CCHC	e7ce5A1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: zf-CCHC	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F, I, J, K E, F, I, J, K, L, O, P	PF02315	Methanol dehydrogenase beta subunit (MDH)	Methanol dehydrogenase beta subunit	Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidises methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.	Domain
A, B, C, D, G A, B, C, D, G, H, M, N	PF01011	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain (PQQ)	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, I, J, K E, F, I, J, K, L, O, P	Methanol dehydrogenase [cytochrome c] subunit 2	alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NAD+) activity catalytic activity oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor alcohol dehydrogenase (cytochrome c(L)) activity	methanol oxidation alcohol metabolic process small molecule metabolic process metabolic process cellular process methanol metabolic process primary alcohol metabolic process	-
A, B, C, D, G A, B, C, D, G, H, M, N	Methanol dehydrogenase protein, large subunit	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding heterocyclic compound binding pyrroloquinoline quinone binding	-	cellular anatomical structure membrane extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, I, J, K E, F, I, J, K, L, O, P	IPR036557	Methanol dehydrogenase, beta subunit superfamily	Homologous Superfamily
E, F, I, J, K E, F, I, J, K, L, O, P	IPR003420	Methanol dehydrogenase, beta subunit	Family
A, B, C, D, G A, B, C, D, G, H, M, N	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A, B, C, D, G A, B, C, D, G, H, M, N	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B, C, D, G A, B, C, D, G, H, M, N	IPR001479	Quinoprotein dehydrogenase, conserved site	Conserved Site
A, B, C, D, G A, B, C, D, G, H, M, N	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A, B, C, D, G A, B, C, D, G, H, M, N	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.