SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA90% H2O/10% D2O111 mM7.21 atm278.75Bruker AVIII 600
32D 1H-1H NOESY1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA100% D2O111 mM7.21 atm303.65Bruker AVIII 600
52D 1H-1H TOCSY1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA100% D2O111 mM7.21 atm303.65Bruker AVIII 600
62D 31P-1H HETCOR1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA100% D2O111 mM7.21 atm303.65Bruker AVIII 600
72D 1H-13C HSQC1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA100% D2O111 mM7.21 atm303.65Bruker AVIII 600
82D 1H-13C HMBC1.0 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1.0 mM NA-H DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(SGT)P*G)-3'), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA100% D2O111 mM7.21 atm303.65Bruker AVIII 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVIII600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3chemical shift assignmentCcpNmr Analysis2.4.2Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue
4peak pickingCcpNmr Analysis2.4.2Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue