☰ Navigation Tabs
Crystal structure of MurE from E.coli in complex with Z1675346324
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7B53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.1M citrate pH 5.5
23% PEG4K
16% 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.276 α = 97.234 b = 58.293 β = 91.447 c = 74.115 γ = 105.313
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 73.42 96 0.087 0.996 8 1.7 66302
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 0.672 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7B53 1.937 73.388 66274 3393 95.596 0.207 0.2049 0.2108 0.2557 0.2591 39.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.064 1.729 0.361 0.137 1.354 -1.594
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.117 r_dihedral_angle_4_deg 15.922 r_dihedral_angle_3_deg 14.569 r_lrange_it 6.994 r_lrange_other 6.98 r_dihedral_angle_1_deg 6.612 r_scangle_it 5.373 r_scangle_other 5.373 r_mcangle_it 4.122 r_mcangle_other 4.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.117 r_dihedral_angle_4_deg 15.922 r_dihedral_angle_3_deg 14.569 r_lrange_it 6.994 r_lrange_other 6.98 r_dihedral_angle_1_deg 6.612 r_scangle_it 5.373 r_scangle_other 5.373 r_mcangle_it 4.122 r_mcangle_other 4.122 r_scbond_it 3.537 r_scbond_other 3.537 r_mcbond_it 2.939 r_mcbond_other 2.938 r_angle_refined_deg 1.486 r_angle_other_deg 1.275 r_symmetry_xyhbond_nbd_refined 0.279 r_nbd_refined 0.207 r_nbd_other 0.203 r_symmetry_nbd_refined 0.197 r_symmetry_nbd_other 0.174 r_xyhbond_nbd_refined 0.153 r_nbtor_refined 0.151 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.065 r_symmetry_xyhbond_nbd_other 0.025 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7251 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing