7AV8

Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P21212

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	0.1M HEPES pH 7.5, 0.15M magnesium chloride, 32% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.2	44.13

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.62	α = 90
b = 91.81	β = 90
c = 23.98	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2014-03-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.9200	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.63	50.59	99.7	0.999	27.5	6.3		17450

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.63	1.67			0.861

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3MB3	1.63	50.588	17405	880	99.531	0.209	0.207	0.2482	36.407

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.631			1.524		0.107

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	27.842
r_dihedral_angle_3_deg	14.504
r_dihedral_angle_4_deg	13.672
r_dihedral_angle_1_deg	5.435
r_lrange_it	5.112
r_lrange_other	5.065
r_scangle_it	3.373
r_scangle_other	3.371
r_mcangle_it	2.271
r_mcangle_other	2.271
r_scbond_it	2.253
r_scbond_other	2.251
r_angle_refined_deg	1.502
r_mcbond_it	1.485
r_mcbond_other	1.48
r_angle_other_deg	1.453
r_nbd_refined	0.219
r_nbd_other	0.208
r_symmetry_xyhbond_nbd_refined	0.187
r_nbtor_refined	0.173
r_symmetry_nbd_other	0.163
r_xyhbond_nbd_refined	0.124
r_symmetry_nbd_refined	0.083
r_chiral_restr	0.08
r_symmetry_nbtor_other	0.077
r_xyhbond_nbd_other	0.019
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1014
Nucleic Acid Atoms
Solvent Atoms	93
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing