7ALX

Sav-SOD: Chimeric Streptavidin-cSOD as Host for Artificial Metalloenzymes


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529320 %w/v PEG 3350 (Precipitant) 0.2 M Na K Phos (Salt) 0.1 M BIS-TRIS prop 7.5 pH (Buffer)
Crystal Properties
Matthews coefficientSolvent content
1.9336.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.525α = 90
b = 102.525β = 90
c = 59.077γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.999SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.845.8931000.99918.924.429784
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.841000.958

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4IRW1.845.89329743144599.970.1810.17940.218227.668
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.195-0.1950.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.538
r_dihedral_angle_4_deg14.674
r_dihedral_angle_3_deg11.408
r_dihedral_angle_1_deg7.921
r_lrange_it6.619
r_lrange_other6.519
r_scangle_other4.667
r_scangle_it4.66
r_mcangle_it3.97
r_mcangle_other3.968
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.538
r_dihedral_angle_4_deg14.674
r_dihedral_angle_3_deg11.408
r_dihedral_angle_1_deg7.921
r_lrange_it6.619
r_lrange_other6.519
r_scangle_other4.667
r_scangle_it4.66
r_mcangle_it3.97
r_mcangle_other3.968
r_scbond_it3.098
r_scbond_other3.071
r_mcbond_it2.648
r_mcbond_other2.645
r_angle_refined_deg1.973
r_angle_other_deg1.546
r_symmetry_nbd_refined0.208
r_nbd_refined0.201
r_chiral_restr0.199
r_nbd_other0.198
r_symmetry_nbd_other0.191
r_nbtor_refined0.183
r_xyhbond_nbd_refined0.152
r_symmetry_xyhbond_nbd_refined0.13
r_symmetry_nbtor_other0.085
r_bond_refined_d0.015
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1839
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing
Aimlessdata scaling