X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29341% PEG 300 0.1M pH=8.8 CHES/NaOH
Crystal Properties
Matthews coefficientSolvent content
1.8633.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.149α = 90
b = 97.934β = 90
c = 139.538γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-10-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL45XU1.0000SPring-8BL45XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6448.4198.80.0956.463.92132203
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.641.740.824

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.7348.41125241675199.840.16560.16430.1891RANDOM31.794
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.72-1.390.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.174
r_dihedral_angle_4_deg19.401
r_dihedral_angle_3_deg13.769
r_dihedral_angle_1_deg8.741
r_angle_refined_deg1.408
r_angle_other_deg0.504
r_chiral_restr0.072
r_bond_refined_d0.009
r_bond_other_d0.001
r_gen_planes_refined0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.174
r_dihedral_angle_4_deg19.401
r_dihedral_angle_3_deg13.769
r_dihedral_angle_1_deg8.741
r_angle_refined_deg1.408
r_angle_other_deg0.504
r_chiral_restr0.072
r_bond_refined_d0.009
r_bond_other_d0.001
r_gen_planes_refined0.001
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8884
Nucleic Acid Atoms
Solvent Atoms507
Heterogen Atoms359

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
XDSdata scaling
REFMACphasing