7ZWB

human Carbonic Anhydrase II in complex with 4-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)thio)benzenesulfonamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82981.5 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.0941.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.527α = 90
b = 41.257β = 104.608
c = 72.111γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI JUNGFRAU 4M2018-09-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID291.0399ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4829.13694.60.1320.1670.9764.272.5538457
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.481.5893.60.6610.8350.5681.022.45

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE4FIK1.4829.13638258186594.2110.2020.20120.227116.003
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.002-0.001-0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.299
r_dihedral_angle_4_deg22.218
r_dihedral_angle_3_deg12.572
r_dihedral_angle_1_deg7.488
r_lrange_other4.74
r_lrange_it4.739
r_scangle_other3.38
r_scangle_it3.371
r_scbond_it2.175
r_scbond_other2.174
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.299
r_dihedral_angle_4_deg22.218
r_dihedral_angle_3_deg12.572
r_dihedral_angle_1_deg7.488
r_lrange_other4.74
r_lrange_it4.739
r_scangle_other3.38
r_scangle_it3.371
r_scbond_it2.175
r_scbond_other2.174
r_mcangle_other1.978
r_mcangle_it1.967
r_angle_refined_deg1.698
r_angle_other_deg1.404
r_mcbond_it1.368
r_mcbond_other1.292
r_symmetry_nbd_refined0.271
r_nbd_other0.268
r_nbd_refined0.23
r_symmetry_xyhbond_nbd_refined0.2
r_symmetry_nbd_other0.195
r_nbtor_refined0.174
r_xyhbond_nbd_refined0.156
r_metal_ion_refined0.117
r_chiral_restr0.081
r_symmetry_nbtor_other0.08
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2040
Nucleic Acid Atoms
Solvent Atoms269
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing