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Crystal Structure of Aichivirus A 2A protein L64M, L109M mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1M MES pH6.75
30% PEG 30000
10mM TCEP
Crystal Properties Matthews coefficient Solvent content 2.32 46.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.569 α = 90 b = 77.445 β = 90 c = 98.858 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97934 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 41.67 99 0.056 0.044 0.999 14.8 4 41619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.77 1.093 0.84 0.536
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.74 41.67 41578 2113 98.61 0.199 0.1977 0.2049 0.2181 0.2272 29.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.122 -0.753 0.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.903 r_dihedral_angle_6_deg 14.556 r_dihedral_angle_3_deg 11.649 r_dihedral_angle_1_deg 7.085 r_lrange_it 5.64 r_lrange_other 5.615 r_scangle_it 3.557 r_scangle_other 3.556 r_mcangle_it 2.988 r_mcangle_other 2.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.903 r_dihedral_angle_6_deg 14.556 r_dihedral_angle_3_deg 11.649 r_dihedral_angle_1_deg 7.085 r_lrange_it 5.64 r_lrange_other 5.615 r_scangle_it 3.557 r_scangle_other 3.556 r_mcangle_it 2.988 r_mcangle_other 2.987 r_scbond_it 2.37 r_scbond_other 2.37 r_mcbond_it 1.934 r_mcbond_other 1.934 r_angle_refined_deg 1.329 r_angle_other_deg 0.441 r_nbd_other 0.219 r_nbd_refined 0.201 r_symmetry_nbd_other 0.186 r_symmetry_nbd_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.175 r_ncsr_local_group_3 0.124 r_xyhbond_nbd_refined 0.118 r_ncsr_local_group_2 0.11 r_ncsr_local_group_1 0.098 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.068 r_chiral_restr_other 0.009 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2476 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing