7ZUN

Crystal structure of PIM1 in complex with a Pyrrolo-Pyrazinone compound

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.6	293	20% PEG 3350K, 0.3 M NACL, 0.1 M TRIS-HCL PH 7.6

Crystal Properties
Matthews coefficient	Solvent content
2.91	57.78

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.09	α = 90
b = 95.09	β = 90
c = 80.181	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2010-11-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29	0.976	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	36.7	99.3	0.093	0.996	11.4	4.4		14258

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.5	2.6	99.6		0.47	0.807

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1YHS	2.5	36.655	14232	716	99.15	0.177	0.1744	0.235	47.926

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.293	0.646		1.293		-4.193

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.734
r_dihedral_angle_4_deg	21.234
r_dihedral_angle_3_deg	14.882
r_lrange_other	7.318
r_lrange_it	7.315
r_dihedral_angle_1_deg	6.62
r_scangle_it	5.164
r_scangle_other	5.163
r_mcangle_it	4.752
r_mcangle_other	4.751
r_scbond_it	3.256
r_scbond_other	3.255
r_mcbond_it	3.046
r_mcbond_other	3.045
r_angle_refined_deg	1.315
r_angle_other_deg	1.294
r_xyhbond_nbd_other	0.644
r_symmetry_xyhbond_nbd_refined	0.606
r_symmetry_nbd_refined	0.24
r_nbd_other	0.215
r_nbd_refined	0.206
r_symmetry_nbd_other	0.193
r_nbtor_refined	0.166
r_xyhbond_nbd_refined	0.137
r_symmetry_xyhbond_nbd_other	0.091
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.058
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2186
Nucleic Acid Atoms
Solvent Atoms	46
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing