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Crystal Structure of Human Parechovirus 1 2A protein lacking the C-terminal oligomerisation helix
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.1M Hepes-NAOH pH7.0
15% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.04 39.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.692 α = 90 b = 71.666 β = 97.104 c = 32.704 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.9794 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 41.173 100 0.056 0.035 0.998 16.3 6.9 11948
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.77 1.094 0.675 0.651 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.74 41.173 11948 582 100 0.201 0.1992 0.212 0.2257 0.2382 33.538
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.725 -0.379 1.272 -1.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.669 r_dihedral_angle_3_deg 13.117 r_dihedral_angle_2_deg 10.717 r_lrange_other 6.954 r_lrange_it 6.948 r_dihedral_angle_1_deg 6.163 r_scangle_it 4.897 r_scangle_other 4.894 r_mcangle_it 3.634 r_mcangle_other 3.632
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.669 r_dihedral_angle_3_deg 13.117 r_dihedral_angle_2_deg 10.717 r_lrange_other 6.954 r_lrange_it 6.948 r_dihedral_angle_1_deg 6.163 r_scangle_it 4.897 r_scangle_other 4.894 r_mcangle_it 3.634 r_mcangle_other 3.632 r_scbond_it 3.218 r_scbond_other 3.215 r_mcbond_it 2.424 r_mcbond_other 2.422 r_angle_refined_deg 1.028 r_symmetry_xyhbond_nbd_refined 0.53 r_angle_other_deg 0.384 r_symmetry_nbd_refined 0.25 r_nbd_refined 0.22 r_nbtor_refined 0.18 r_symmetry_nbd_other 0.179 r_nbd_other 0.128 r_xyhbond_nbd_refined 0.123 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.053 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1007 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing