☰ Navigation Tabs
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Q9G
Sample OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN Sample Components SARS-COV-2 BETA SPIKE GLYCOPROTEIN OMI-38 FAB
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 201474 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Based on PDB half map estimation, cryoSPARC gold standard stated as 2.9 A resolution. Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7Q9G) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Correlation coefficient Overall B Value 30.3 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC MODEL FITTING Coot MODEL REFINEMENT PHENIX FINAL EULER ASSIGNMENT cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Patch CTF correction