☰ Navigation Tabs
Azosemide in complex with Carbonic Anhydrase I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties Matthews coefficient Solvent content 2.37 48.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.23 α = 90 b = 71.78 β = 90 c = 120.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.971700 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.479 46.289 100 0.049 0.052 1 24.43 12.48 92506
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.479 1.52 100 1.232 1.286 0.872 2.27 12.35
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1JV0 1.479 46.289 92505 4583 99.948 0.186 0.1843 0.1927 0.2139 0.2197 25.308
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.529 1.87 -1.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.194 r_dihedral_angle_4_deg 17.407 r_dihedral_angle_3_deg 14.343 r_dihedral_angle_1_deg 7.526 r_lrange_it 6.084 r_lrange_other 6.078 r_scangle_other 5.129 r_scangle_it 5.124 r_scbond_it 3.588 r_scbond_other 3.578
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.194 r_dihedral_angle_4_deg 17.407 r_dihedral_angle_3_deg 14.343 r_dihedral_angle_1_deg 7.526 r_lrange_it 6.084 r_lrange_other 6.078 r_scangle_other 5.129 r_scangle_it 5.124 r_scbond_it 3.588 r_scbond_other 3.578 r_mcangle_other 3.005 r_mcangle_it 3.003 r_mcbond_it 2.208 r_mcbond_other 2.204 r_angle_refined_deg 1.786 r_angle_other_deg 1.464 r_nbd_refined 0.205 r_symmetry_xyhbond_nbd_refined 0.194 r_nbd_other 0.193 r_symmetry_nbd_other 0.188 r_symmetry_nbd_refined 0.179 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.083 r_metal_ion_refined 0.065 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4016 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing