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Aspergillus clavatus M36 protease without the propeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4K90
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1 M HEPES pH 7.5, 0.2 M lithium sulfate, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.77 55.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.826 α = 90 b = 85.037 β = 111.303 c = 55.319 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.9762 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 45.04 98.72 0.8 12.25 6.3 71273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.564 0.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4k90 1.51 45.04 71273 3523 97.131 0.178 0.1775 0.1622 0.196 0.1708 22.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 0.747 -1.571 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.608 r_dihedral_angle_4_deg 19.682 r_dihedral_angle_3_deg 13.669 r_lrange_it 7.393 r_dihedral_angle_1_deg 6.19 r_scangle_it 4.143 r_scbond_it 3.033 r_mcangle_it 2.359 r_angle_refined_deg 1.701 r_mcbond_it 1.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.608 r_dihedral_angle_4_deg 19.682 r_dihedral_angle_3_deg 13.669 r_lrange_it 7.393 r_dihedral_angle_1_deg 6.19 r_scangle_it 4.143 r_scbond_it 3.033 r_mcangle_it 2.359 r_angle_refined_deg 1.701 r_mcbond_it 1.577 r_nbtor_refined 0.321 r_symmetry_nbd_refined 0.236 r_symmetry_xyhbond_nbd_refined 0.228 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.207 r_chiral_restr 0.109 r_symmetry_metal_ion_refined 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2994 Nucleic Acid Atoms Solvent Atoms 449 Heterogen Atoms 186
Software Software Software Name Purpose REFMAC refinement PHENIX refinement MxCuBE data collection XDS data reduction XDS data scaling Coot model building PHASER phasing