7Z0L
IL-27 signalling complex
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 14.105 |
f_angle_d | 0.9246 |
f_chiral_restr | 0.0614 |
f_plane_restr | 0.0132 |
f_bond_d | 0.0045 |
Sample |
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IL-27 Signalling complex |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blot time 2s, blot force -2 |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 208431 |
Reported Resolution (Å) | 4 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | Final reconstruction was performed using local refinement in cryoSPARC. |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 | ||||
Refinement Space | REAL | ||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | Initial fitting was performed using Chimera and ChimeraX. Then ISOLDE and Phenix real space refine were used to refine the model. |
Data Acquisition | |||||||||
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Detector Type | GATAN K3 (6k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 50 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 500 |
Maximum Defocus (nm) | 3500 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 81000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
IMAGE ACQUISITION | EPU | 2.11.1.11 |
CTF CORRECTION | cryoSPARC | 3.3.1 |
MODEL FITTING | UCSF Chimera | 1.13.1 |
MODEL FITTING | UCSF ChimeraX | 1.3 |
MODEL REFINEMENT | ISOLDE | 1.3 |
MODEL REFINEMENT | PHENIX | 1.19.2-4158 |
INITIAL EULER ASSIGNMENT | cryoSPARC | 3.3.1 |
FINAL EULER ASSIGNMENT | cryoSPARC | 3.3.1 |
CLASSIFICATION | cryoSPARC | 3.3.1 |
RECONSTRUCTION | cryoSPARC | 3.3.1 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
NONE | CTF correction was performed following 3D reconstruction. Local CTF refinement was carried out during refinement | 1811398 |