7YZJ

FAB IN COMPLEX WITH ANTIGENIC PEPTIDE OF INTERLEUKIN-2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION29015 mg/ml, 10% polyethylene glycol 4000, 7% 2-propanol, 60 mM Na-HEPES (pH ~7.6).
Crystal Properties
Matthews coefficientSolvent content
2.3447.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.935α = 90
b = 72.218β = 90
c = 88.33γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 130 mm2016-02-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMACSCIENCE M06X1.34

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.62087.340.1983.13.511823
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.70.63

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1F902.6201182398887.340.16370.15770.2405RANDOM37.58
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.06-1.461.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.421
r_dihedral_angle_4_deg19.056
r_dihedral_angle_3_deg16.271
r_dihedral_angle_1_deg6.238
r_angle_other_deg1.359
r_angle_refined_deg0.771
r_chiral_restr0.037
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.421
r_dihedral_angle_4_deg19.056
r_dihedral_angle_3_deg16.271
r_dihedral_angle_1_deg6.238
r_angle_other_deg1.359
r_angle_refined_deg0.771
r_chiral_restr0.037
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3454
Nucleic Acid Atoms
Solvent Atoms53
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
AMoREphasing