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Crystal structure of the human FoxH1 bound to the TGTGGATT site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7YZ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.3 277 18% PEG 3350, 0.2 M ammonium chloride pH 6.3
Crystal Properties Matthews coefficient Solvent content 2.37 48.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.118 α = 90 b = 78.029 β = 100.46 c = 51.879 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979257 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 51.02 100 0.104 0.108 0.027 0.997 19.1 15 36550
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.471 1.618 50.6 0.454 0.912 1.5 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7YZ7 1.47 51.02 34784 1771 75.94 0.1636 0.1621 0.1663 0.1905 0.1987 RANDOM 39.719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 0.4 -0.83 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.972 r_dihedral_angle_4_deg 19.189 r_dihedral_angle_3_deg 14.373 r_dihedral_angle_1_deg 5.622 r_rigid_bond_restr 2.627 r_angle_refined_deg 1.44 r_angle_other_deg 1.283 r_chiral_restr 0.083 r_gen_planes_refined 0.011 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.972 r_dihedral_angle_4_deg 19.189 r_dihedral_angle_3_deg 14.373 r_dihedral_angle_1_deg 5.622 r_rigid_bond_restr 2.627 r_angle_refined_deg 1.44 r_angle_other_deg 1.283 r_chiral_restr 0.083 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1037 Nucleic Acid Atoms 650 Solvent Atoms 152 Heterogen Atoms 1
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction autoPROC data reduction PHENIX phasing