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Crystal structure of the zebrafish FoxH1 bound to the TGTGTATT site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7YZ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 41% PEG Smear LOW
Crystal Properties Matthews coefficient Solvent content 2.2 44.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.388 α = 90 b = 29.917 β = 108.25 c = 75.719 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97926 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 46.78 85.1 0.031 0.037 0.02 0.999 15.4 3.1 57653
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.239 41.6 0.627 0.407 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7yz7 1.18 46.78 54975 2926 82.74 0.1407 0.1403 0.1427 0.148 0.1497 RANDOM 16.526
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.89 0.15 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.919 r_dihedral_angle_4_deg 13.398 r_dihedral_angle_3_deg 12.183 r_dihedral_angle_1_deg 5.387 r_rigid_bond_restr 5.102 r_angle_other_deg 2.054 r_angle_refined_deg 1.652 r_chiral_restr 0.099 r_bond_other_d 0.041 r_gen_planes_other 0.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.919 r_dihedral_angle_4_deg 13.398 r_dihedral_angle_3_deg 12.183 r_dihedral_angle_1_deg 5.387 r_rigid_bond_restr 5.102 r_angle_other_deg 2.054 r_angle_refined_deg 1.652 r_chiral_restr 0.099 r_bond_other_d 0.041 r_gen_planes_other 0.019 r_gen_planes_refined 0.017 r_bond_refined_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1010 Nucleic Acid Atoms 650 Solvent Atoms 219 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling PHENIX phasing