Experiment: 7YWR

NMR structure of the N-terminal domain of Nsp8 from SARS-CoV-2

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
2	2D 1H-15N HSQC	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
13	2D 1H-13C HSQC aromatic	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
12	2D 1H-13C HSQC aliphatic	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
8	3D HNHA	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
5	3D HNCA	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
4	3D HN(CO)CA	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
6	3D HNCACB	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
10	3D CBCA(CO)NH	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
7	3D HNCO	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
11	3D C(CO)NH	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
14	3D H(CCO)NH	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
9	3D HCCH-TOCSY	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
3	3D 1H-13C NOESY aliphatic	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800
1	2D NOESY	100 mM [U-13C; U-15N] Nsp8	90% H2O/10% D2O	50 mM	6.1	1 atm	278	Bruker AVANCE NEO 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	800

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA		Guntert P.
2	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	chemical shift assignment	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL