7YPV

Crystal structure of OrE-ST-F

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1 M MES pH 6.5 0.2 M ammonium sulfate 20% PEG 8000

Crystal Properties
Matthews coefficient	Solvent content
2.6	52.61

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 48.714	α = 89.945
b = 77.826	β = 90.043
c = 108.99	γ = 89.991

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX300HE		2015-12-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	NSRRC BEAMLINE BL15A1	1	NSRRC	BL15A1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.415	20	97.9	0.081	0.099	15.2	2.8		59578

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.42	2.51			0.441	0.545	3.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3PP9	2.415	19.899	59578	2912	96.958	0.213	0.2114	0.2454	34.404

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.657	0.287	-0.235	-0.04	0.424	-1.615

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	24.782
r_dihedral_angle_4_deg	18.011
r_dihedral_angle_3_deg	15.898
r_dihedral_angle_1_deg	6.176
r_lrange_it	5.357
r_lrange_other	5.31
r_scangle_it	3.309
r_scangle_other	3.309
r_mcangle_it	2.886
r_mcangle_other	2.885
r_scbond_it	1.938
r_scbond_other	1.937
r_mcbond_it	1.711
r_mcbond_other	1.71
r_angle_refined_deg	1.414
r_chiral_restr_other	1.232
r_angle_other_deg	1.225
r_nbd_other	0.221
r_nbd_refined	0.173
r_symmetry_nbd_other	0.173
r_xyhbond_nbd_refined	0.162
r_nbtor_refined	0.157
r_symmetry_xyhbond_nbd_refined	0.153
r_symmetry_nbd_refined	0.133
r_symmetry_xyhbond_nbd_other	0.087
r_symmetry_nbtor_other	0.073
r_ncsr_local_group_18	0.07
r_ncsr_local_group_2	0.069
r_chiral_restr	0.067
r_ncsr_local_group_14	0.067
r_ncsr_local_group_17	0.064
r_ncsr_local_group_15	0.063
r_ncsr_local_group_24	0.057
r_ncsr_local_group_1	0.056
r_ncsr_local_group_6	0.056
r_ncsr_local_group_28	0.056
r_ncsr_local_group_9	0.054
r_ncsr_local_group_21	0.054
r_ncsr_local_group_5	0.053
r_ncsr_local_group_23	0.053
r_ncsr_local_group_27	0.053
r_ncsr_local_group_12	0.052
r_ncsr_local_group_16	0.052
r_ncsr_local_group_20	0.052
r_ncsr_local_group_8	0.051
r_ncsr_local_group_13	0.049
r_ncsr_local_group_10	0.048
r_ncsr_local_group_26	0.048
r_ncsr_local_group_3	0.037
r_ncsr_local_group_4	0.037
r_ncsr_local_group_11	0.033
r_ncsr_local_group_19	0.033
r_ncsr_local_group_7	0.032
r_ncsr_local_group_25	0.031
r_ncsr_local_group_22	0.028
r_gen_planes_refined	0.006
r_bond_refined_d	0.005
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10302
Nucleic Acid Atoms
Solvent Atoms	537
Heterogen Atoms	280

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing