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Cryo-EM structure of human OGT-OGA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W3B experimental model PDB 3PE3 experimental model PDB 5UN9
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.1 f_angle_d 0.96 f_chiral_restr 0.049 f_bond_d 0.006 f_plane_restr 0.005
Sample Cryo-EM structure of human OGT-OGA complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 114543 Reported Resolution (Å) 3.92 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (1W3B, 3PE3, 5UN9) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 146 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1300 Maximum Defocus (nm) 2300 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION Gctf MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 114543