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Crystal structure of Methanocaldococcus jannaschii two-subunit Fumarate hydratase apo-protein complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 297 0.2 M magnesium chloride hexahydrate, 0.1 M BIS-TRIS, pH 5.5, 25% w/v polyethylene glycol 3,350
Crystal Properties Matthews coefficient Solvent content 2.3 46.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.949 α = 90 b = 61.7 β = 123.9 c = 83.88 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9787 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 69.62 98.4 0.124 0.995 11.2 7.9 17961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.59 0.525 0.871
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.46 52.13 17022 936 98.08 0.18586 0.18376 0.2037 0.22394 0.244 RANDOM 31.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.55 -0.19 -2.04 2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.37 r_dihedral_angle_4_deg 20.892 r_dihedral_angle_3_deg 16.674 r_dihedral_angle_1_deg 6.812 r_long_range_B_refined 6.728 r_long_range_B_other 6.727 r_scangle_other 5.25 r_mcangle_it 3.924 r_mcangle_other 3.924 r_scbond_it 3.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.37 r_dihedral_angle_4_deg 20.892 r_dihedral_angle_3_deg 16.674 r_dihedral_angle_1_deg 6.812 r_long_range_B_refined 6.728 r_long_range_B_other 6.727 r_scangle_other 5.25 r_mcangle_it 3.924 r_mcangle_other 3.924 r_scbond_it 3.424 r_scbond_other 3.423 r_mcbond_it 2.599 r_mcbond_other 2.583 r_angle_refined_deg 1.825 r_angle_other_deg 1.345 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3502 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling AutoSol phasing