7X5C

Solution structure of Tetrahymena p75OB1-p50PBM


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
22D 1H-13C HSQC0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
32D 1H-13C HSQC aromatic0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
43D HNCO0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
53D HNCACO0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
93D CBCA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
83D HNCACB0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
73D HN(CO)CA0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
63D HNCA0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 600
133D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
123D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
113D 1H-15N NOESY0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
103D 1H-13C NOESY aliphatic0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
153D 1H-13C NOESY aromatic0.5 mM [U-100% 13C; U-100% 15N] p75OB1-p50PBM, 20 mM phosphate buffer, 300 mM sodium chloride, 2 mM DTT, 2 mM benzamidine, 0.5 mM PMSF, 1 % v/v inhibitor cocktail, 0.03 % NaN390% H2O/10% D2O300 mM7.01 atm298Agilent DD2 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentDD2800
2AgilentDD2600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJ4.1Agilent
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7processingMddNMROrekhov, V.Y.
3data analysisNMRFAM-SPARKYLee,W., Tonelli, M., & Markley, J.L.
6chemical shift assignmentI-PINELee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read