NMR solution structure of the 1:1 complex of a pyridostatin (PDS) bound to a G-quadruplex MYT1L
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1.0 mM / MYT1L, 1.0 mM / PDS | 90% H2O/10% D2O | 40 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 600 |
| 2 | 2D 1H-1H TOCSY | 1.0 mM / MYT1L, 1.0 mM / PDS | 90% H2O/10% D2O | 40 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 600 |
| 3 | 2D 1H-1H COSY | 1.0 mM / MYT1L, 1.0 mM / PDS | 90% H2O/10% D2O | 40 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 600 |
| 4 | 2D 1H-1H NOESY | 1.0 mM / MYT1L, 1.0 mM / PDS | 90% H2O/10% D2O | 40 mM | 7.0 | 1 atm | 278 | Bruker AVANCE III 600 |
| 5 | 2D 1H-1H NOESY | 1.2 mM / MYT1L | 90% H2O/10% D2O | 40 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR | Brunger | |
| 2 | structure calculation | X-PLOR | Brunger | |
| 3 | chemical shift assignment | NMRFAM-SPARKY | Woonghee Lee | |
| 4 | peak picking | NMRFAM-SPARKY | Woonghee Lee | |














