7WNR

Data-driven HADDOCK model of mycobacterial nMazE6-operator DNA complex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4 mM [U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
23D HNCACB0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
33D CC(CO)NH0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
43D HNCO0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
53D HN(CA)CO0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
63D H(CCO)NH0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
72D 1H-1H TOCSY0.4 mM NA nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
82D 1H-1H NOESY0.4 mM NA nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
913C, 15N simultaneousEdited NOESY0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
103D HCCH-TOCSY0.4 mM [U-99% 13C; U-99% 15N] nMazE6, 20 mM NA potassium phosphate, 20 mM NA sodium chloride, 1 mM NA EDTA, 0.01 % NA sodium azide, 0.2 mM NA DSS, 10 % [U-99% 2H] D2O90% H2O/10% D2O100 mM71 atm298Agilent Agilent DDS2 600MHz 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentAgilent DDS2 600MHz600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingHADDOCK
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy
Conformers Calculated Total Number200
Conformers Submitted Total Number4
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJ4.2Agilent
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCcpNmr AnalysisCCPN
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementX-PLOR NIH3.1Schwieters, Kuszewski, Tjandra and Clore
6structure calculationHADDOCKBonvin