☰ Navigation Tabs
Crystal structure of Bovine Pancreatic Trypsin in complex with 4-Methoxybenzamidine at Room Temperature
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S0R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 100mM Tris-HCl, 30% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.3 46.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.58 α = 90 b = 58.3 β = 90 c = 67.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER X 4M 2021-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 50 91.4 0.177 0.987 7.8 3.47 30897 11.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.61 88.9 1.212 0.535 2.48 3.68
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1S0R 1.52 39.88 29328 1532 91.43 0.1357 0.13346 0.17753 0.1905 RANDOM 13.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 1.13 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_4_deg 18.204 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 7.116 r_scangle_other 3.832 r_long_range_B_refined 3.55 r_long_range_B_other 3.506 r_scbond_it 3.257 r_scbond_other 3.256 r_rigid_bond_restr 2.625
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.678 r_dihedral_angle_4_deg 18.204 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 7.116 r_scangle_other 3.832 r_long_range_B_refined 3.55 r_long_range_B_other 3.506 r_scbond_it 3.257 r_scbond_other 3.256 r_rigid_bond_restr 2.625 r_mcangle_it 2.311 r_mcangle_other 2.31 r_mcbond_it 1.963 r_mcbond_other 1.963 r_angle_refined_deg 1.732 r_angle_other_deg 1.565 r_chiral_restr 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing