X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.05 M Zinc acetate dihydrate, 20% w/v Polyethylene glycol 3,350
Crystal Properties
Matthews coefficientSolvent content
1.8934.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.2α = 90.02
b = 52.45β = 90
c = 53.37γ = 90
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2020-11-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 20.98011SOLEILPROXIMA 2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1549.2960.1490.9926.83.528719
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.211.1240.1970.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1ow62.16349.227757138897.270.2180.21480.27550.538
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.3390.201-0.481-0.828-0.5363.167
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.854
r_dihedral_angle_4_deg19.068
r_dihedral_angle_3_deg18.782
r_lrange_it12.857
r_scangle_it9.969
r_scbond_it6.717
r_mcangle_it6.514
r_dihedral_angle_1_deg5.687
r_mcbond_it4.326
r_angle_refined_deg1.646
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.854
r_dihedral_angle_4_deg19.068
r_dihedral_angle_3_deg18.782
r_lrange_it12.857
r_scangle_it9.969
r_scbond_it6.717
r_mcangle_it6.514
r_dihedral_angle_1_deg5.687
r_mcbond_it4.326
r_angle_refined_deg1.646
r_nbtor_refined0.315
r_symmetry_nbd_refined0.28
r_nbd_refined0.246
r_xyhbond_nbd_refined0.173
r_symmetry_xyhbond_nbd_refined0.161
r_metal_ion_refined0.129
r_chiral_restr0.124
r_symmetry_metal_ion_refined0.051
r_bond_refined_d0.007
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4105
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MoRDaphasing