7W7Z | pdb_00007w7z

Crystal Structure of human Focal Adhesion Targeting (FAT) domain of the Focal Adhesion Kinase

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1OW6

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	1.0 M Lithium sulfate 0.1 M MES pH 6.5

Crystal Properties
Matthews coefficient	Solvent content
2.17	43.23

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 39.198	α = 90
b = 94.429	β = 90
c = 85.287	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2020-11-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 2	0.98011	SOLEIL	PROXIMA 2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.15	42.64	99.3	0.068	0.071	0.99	17.1	13		8911			55.62

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.15	2.21	95		1.68	0.62	1.7	12.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1ow6	2.15	42.64	8887	445	99.23	0.197	0.1952	0.2	0.2392	0.24	69.639

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.053			-0.064		0.011

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.689
r_dihedral_angle_4_deg	17.958
r_dihedral_angle_3_deg	17.339
r_lrange_it	13.517
r_scangle_it	11.823
r_scbond_it	8.629
r_mcangle_it	7.013
r_dihedral_angle_1_deg	5.583
r_mcbond_it	5.416
r_angle_refined_deg	1.515

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.689
r_dihedral_angle_4_deg	17.958
r_dihedral_angle_3_deg	17.339
r_lrange_it	13.517
r_scangle_it	11.823
r_scbond_it	8.629
r_mcangle_it	7.013
r_dihedral_angle_1_deg	5.583
r_mcbond_it	5.416
r_angle_refined_deg	1.515
r_nbtor_refined	0.312
r_symmetry_nbd_refined	0.267
r_symmetry_xyhbond_nbd_refined	0.237
r_nbd_refined	0.226
r_xyhbond_nbd_refined	0.164
r_chiral_restr	0.112
r_bond_refined_d	0.006
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1125
Nucleic Acid Atoms
Solvent Atoms	23
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MoRDa	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.