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Helicoverpa armigera pheromone-binding protein PBP1 with Z-9-hexadecenal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7VW9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 peg
Crystal Properties Matthews coefficient Solvent content 1.86 33.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.907 α = 90 b = 33.356 β = 98.79 c = 56.044 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.0000 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 50 98.2 0.057 0.991 31.1 4.9 7259
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.13 81 0.302 0.953 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7VW9 2.1 32.54 6682 394 98.4 0.20066 0.19863 0.2041 0.23592 0.2244 RANDOM 28.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 -1.63 0.63 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.287 r_dihedral_angle_3_deg 14.903 r_dihedral_angle_4_deg 12.807 r_dihedral_angle_1_deg 5.004 r_angle_refined_deg 1.515 r_angle_other_deg 1.297 r_long_range_B_refined 0.889 r_long_range_B_other 0.852 r_rigid_bond_restr 0.681 r_mcangle_it 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.287 r_dihedral_angle_3_deg 14.903 r_dihedral_angle_4_deg 12.807 r_dihedral_angle_1_deg 5.004 r_angle_refined_deg 1.515 r_angle_other_deg 1.297 r_long_range_B_refined 0.889 r_long_range_B_other 0.852 r_rigid_bond_restr 0.681 r_mcangle_it 0.297 r_mcangle_other 0.297 r_scangle_other 0.251 r_mcbond_it 0.173 r_mcbond_other 0.173 r_scbond_it 0.152 r_scbond_other 0.152 r_chiral_restr 0.062 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1059 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling BALBES phasing