7VRL

Solution structure of Rbfox RRM bound to a non-cognate RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
23D 1H-15N NOESY1 mM [U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 800
33D 1H-13C NOESY1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 800
43D NHCACB1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
53D CBCA(CO)NH1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
63D HNCO1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
73D NH(CA)CO1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
103D HBHA(CO)NH1 mM [U-13C; U-15N] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide90% H2O/10% D2O40 mM6.01 atm298Bruker AVANCE 600
93D HCCH-TOCSY1 mM [U-15N, U-13C] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide100% D2O40 mM6.01 atm298Bruker AVANCE 600
82D 1H-13C HSQC1 mM [U-15N, U-13C] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide100% D2O40 mM6.01 atm298Bruker AVANCE 600
112D F1-F2- filtered NOESY1 mM [U-15N, U-13C] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide100% D2O40 mM6.01 atm298Bruker AVANCE 800
122D TOCSY1 mM [U-15N, U-13C] protein, 1.2 mM unlabeled RNA, 10 mM unlabeled sodium phosphate, 30 mM unlabeled sodium chloride, 0.05 % w/v unlabeled sodium azide100% D2O40 mM6.01 atm298Bruker AVANCE 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCcpNmr AnalysisCCPN
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman