7VLB

Crystal structure of UGT109A1 from Bacillus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293.15	PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.68	66.57

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 137.874	α = 90
b = 137.874	β = 90
c = 135.73	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS PILATUS3 6M		2020-12-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL19U1	0.989	SSRF	BL19U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3	48.75	100	0.078	0.08	1	23	20		26821

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3	3.05			0.618	0.97

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1IIR	3	48.746	26769	1297	99.884	0.234	0.2313	0.2754	87.384

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.464			1.464		-2.929

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.237
r_dihedral_angle_4_deg	21.538
r_dihedral_angle_3_deg	19.871
r_lrange_it	13.599
r_lrange_other	13.598
r_mcangle_it	9.829
r_mcangle_other	9.828
r_scangle_it	9.743
r_scangle_other	9.742
r_dihedral_angle_1_deg	7.968
r_mcbond_it	6.386
r_mcbond_other	6.385
r_scbond_it	6.35
r_scbond_other	6.349
r_angle_other_deg	2.329
r_angle_refined_deg	1.728
r_symmetry_nbd_refined	0.447
r_symmetry_xyhbond_nbd_refined	0.321
r_symmetry_nbd_other	0.242
r_nbd_refined	0.227
r_nbd_other	0.197
r_nbtor_refined	0.173
r_xyhbond_nbd_refined	0.152
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.067
r_bond_other_d	0.035
r_symmetry_xyhbond_nbd_other	0.01
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5780
Nucleic Acid Atoms
Solvent Atoms	22
Heterogen Atoms	50

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing