☰ Navigation Tabs
The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with methyl beta-D-glucoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M Tris-HCl (pH 7.5), 0.2M calcium acetate, 20%(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.17 43.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.949 α = 90 b = 71.65 β = 105.59 c = 130.11 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2017-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 47.99 98.3 0.101 9.4 3.8 126164
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.86 97.1 0.639 1.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.83 19.978 124816 6227 97.337 0.173 0.1713 0.181 0.2085 0.2145 15.267
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 0.001 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.688 r_dihedral_angle_4_deg 19.789 r_dihedral_angle_3_deg 14.729 r_dihedral_angle_1_deg 7.014 r_lrange_it 4.631 r_lrange_other 4.562 r_scangle_it 3.172 r_scangle_other 3.172 r_mcangle_it 2.093 r_mcangle_other 2.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.688 r_dihedral_angle_4_deg 19.789 r_dihedral_angle_3_deg 14.729 r_dihedral_angle_1_deg 7.014 r_lrange_it 4.631 r_lrange_other 4.562 r_scangle_it 3.172 r_scangle_other 3.172 r_mcangle_it 2.093 r_mcangle_other 2.093 r_scbond_it 1.965 r_scbond_other 1.965 r_angle_refined_deg 1.569 r_angle_other_deg 1.346 r_mcbond_it 1.318 r_mcbond_other 1.318 r_symmetry_xyhbond_nbd_refined 0.212 r_nbd_refined 0.203 r_symmetry_xyhbond_nbd_other 0.182 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.175 r_symmetry_nbd_refined 0.175 r_xyhbond_nbd_refined 0.165 r_nbd_other 0.165 r_symmetry_metal_ion_refined 0.128 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.077 r_metal_ion_refined 0.05 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11666 Nucleic Acid Atoms Solvent Atoms 957 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing