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Crystal structure of Phenylalanine hydroxylase from Bacillus cereus ATCC 14579
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Polyethylene glycol 3,350, Sodium acetate trihydrate
Crystal Properties Matthews coefficient Solvent content 2.7 54.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.273 α = 90 b = 93.698 β = 90 c = 95.676 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 50 99.2 0.104 0.122 0.062 9.4 3.6 32319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.32 97.8 0.358 0.427 0.228 0.877 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.27 33.49 30701 1570 98.85 0.1764 0.1732 0.1954 0.2409 0.2457 RANDOM 35.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 3.57 -3.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.259 r_dihedral_angle_4_deg 17.254 r_dihedral_angle_3_deg 14.236 r_dihedral_angle_1_deg 6.609 r_angle_refined_deg 1.458 r_angle_other_deg 1.274 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.259 r_dihedral_angle_4_deg 17.254 r_dihedral_angle_3_deg 14.236 r_dihedral_angle_1_deg 6.609 r_angle_refined_deg 1.458 r_angle_other_deg 1.274 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4425 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling AutoSol phasing PDB_EXTRACT data extraction HKL-2000 data reduction