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Thermostabilized human prestin in complex with salicylate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5DA0
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 59.18 r_lrange_other 59.18 r_scangle_it 41.461 r_scangle_other 41.455 r_dihedral_angle_2_deg 33.749 r_mcangle_it 31.705 r_mcangle_other 31.705 r_scbond_it 27.004 r_scbond_other 27 r_mcbond_it 22.891
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 59.18 r_lrange_other 59.18 r_scangle_it 41.461 r_scangle_other 41.455 r_dihedral_angle_2_deg 33.749 r_mcangle_it 31.705 r_mcangle_other 31.705 r_scbond_it 27.004 r_scbond_other 27 r_mcbond_it 22.891 r_mcbond_other 22.879 r_dihedral_angle_3_deg 18.823 r_dihedral_angle_4_deg 18.797 r_dihedral_angle_1_deg 5.508 r_angle_refined_deg 1.716 r_angle_other_deg 1.348 r_nbd_other 0.24 r_ext_dist_refined_d 0.217 r_symmetry_nbd_refined 0.213 r_nbd_refined 0.202 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.08 r_bond_other_d 0.028 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
Sample prestin in complex with chloride ion
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 113410 Reported Resolution (Å) 3.57 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (5DA0) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING Coot MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION