☰ Navigation Tabs
Thermostabilized human prestin in complex with sulfate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5DA0
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 59.261 r_long_range_B_refined 59.26 r_scangle_other 48.844 r_mcangle_it 37.082 r_mcangle_other 37.076 r_scbond_it 33.514 r_scbond_other 33.508 r_mcbond_it 28.202 r_mcbond_other 28.148 r_dihedral_angle_2_deg 22.469
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 59.261 r_long_range_B_refined 59.26 r_scangle_other 48.844 r_mcangle_it 37.082 r_mcangle_other 37.076 r_scbond_it 33.514 r_scbond_other 33.508 r_mcbond_it 28.202 r_mcbond_other 28.148 r_dihedral_angle_2_deg 22.469 r_dihedral_angle_3_deg 17.723 r_dihedral_angle_1_deg 7.067 r_angle_refined_deg 2.02 r_angle_other_deg 0.615 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample prestin in complex with chloride ion
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 249144 Reported Resolution (Å) 3.63 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (5DA0) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING Coot MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION