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Thermostabilized human prestin in complex with chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5DA0
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 51.626 r_lrange_other 51.625 r_scangle_it 41.837 r_scangle_other 41.831 r_mcangle_it 33.307 r_mcangle_other 33.302 r_dihedral_angle_2_deg 31.443 r_scbond_it 27.522 r_scbond_other 27.517 r_mcbond_it 24.912
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 51.626 r_lrange_other 51.625 r_scangle_it 41.837 r_scangle_other 41.831 r_mcangle_it 33.307 r_mcangle_other 33.302 r_dihedral_angle_2_deg 31.443 r_scbond_it 27.522 r_scbond_other 27.517 r_mcbond_it 24.912 r_mcbond_other 24.903 r_dihedral_angle_3_deg 16.746 r_dihedral_angle_4_deg 14.19 r_dihedral_angle_1_deg 6.37 r_angle_refined_deg 1.697 r_angle_other_deg 1.32 r_nbd_refined 0.197 r_symmetry_nbd_refined 0.186 r_xyhbond_nbd_refined 0.184 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.175 r_nbd_other 0.155 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Sample prestin in complex with chloride ion
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 341744 Reported Resolution (Å) 3.52 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (5DA0) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION