7V6C

Structure of the Dicer-2-R2D2 heterodimer bound to small RNA duplex


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.105
r_long_range_B_refined26.307
r_long_range_B_other26.307
r_dihedral_angle_3_deg15.25
r_scangle_other14.715
r_mcangle_it11.851
r_mcangle_other11.85
r_dihedral_angle_4_deg9.259
r_scbond_it8.575
r_scbond_other8.575
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.105
r_long_range_B_refined26.307
r_long_range_B_other26.307
r_dihedral_angle_3_deg15.25
r_scangle_other14.715
r_mcangle_it11.851
r_mcangle_other11.85
r_dihedral_angle_4_deg9.259
r_scbond_it8.575
r_scbond_other8.575
r_mcbond_it7.155
r_mcbond_other7.155
r_dihedral_angle_1_deg4.406
r_angle_other_deg1.449
r_angle_refined_deg1.185
r_chiral_restr0.087
r_bond_other_d0.031
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Dicer-2-R2D2-siRNA
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameNITROGEN
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles144979
Reported Resolution (Å)3.3
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)48
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION