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Crystal structure of JAK3 kinase domain in complex with compound 25
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 Crystals of human JAK3 in complex with the ligand were prepared according to established protocols
Crystal Properties Matthews coefficient Solvent content 2.7 53.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.074 α = 90 b = 114.166 β = 97.54 c = 106.086 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-01-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 105.17 96 0.065 14.04 2.8 70329
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.4 96.3 0.434 0.539 2.76 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.15 105.17 68763 1558 96.04 0.2215 0.2206 0.2388 0.2629 0.2859 RANDOM 39.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 0.13 -2.17 3.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 14.557 r_dihedral_angle_3_deg 12.455 r_dihedral_angle_1_deg 5.15 r_angle_other_deg 1.247 r_angle_refined_deg 1.085 r_nbtor_refined 0.156 r_nbd_refined 0.155 r_nbd_other 0.142 r_symmetry_vdw_other 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 14.557 r_dihedral_angle_3_deg 12.455 r_dihedral_angle_1_deg 5.15 r_angle_other_deg 1.247 r_angle_refined_deg 1.085 r_nbtor_refined 0.156 r_nbd_refined 0.155 r_nbd_other 0.142 r_symmetry_vdw_other 0.109 r_xyhbond_nbd_refined 0.081 r_symmetry_hbond_refined 0.068 r_nbtor_other 0.066 r_symmetry_vdw_refined 0.064 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8984 Nucleic Acid Atoms Solvent Atoms 438 Heterogen Atoms 116
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction