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CBM74 from Ruminococcus bromii Sas6 with maltodecaose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7UWU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 30% Tacsimate, 0.1M HEPES
Crystal Properties Matthews coefficient Solvent content 3.29 62.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.69 α = 90 b = 160.071 β = 90 c = 67.858 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2021-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.979 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 80.04 99.9 0.053 0.057 0.023 0.999 17.2 6.1 84139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.677 0.74 0.296 0.86 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7UWU 1.7 80.04 80016 4057 99.88 0.1739 0.1727 0.1855 0.1982 0.2085 RANDOM 30.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 -0.73 2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.915 r_dihedral_angle_4_deg 15.851 r_dihedral_angle_3_deg 11.607 r_dihedral_angle_1_deg 6.509 r_angle_refined_deg 1.292 r_angle_other_deg 1.248 r_chiral_restr 0.049 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.915 r_dihedral_angle_4_deg 15.851 r_dihedral_angle_3_deg 11.607 r_dihedral_angle_1_deg 6.509 r_angle_refined_deg 1.292 r_angle_other_deg 1.248 r_chiral_restr 0.049 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4038 Nucleic Acid Atoms Solvent Atoms 674 Heterogen Atoms 237
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction autoPROC data reduction PHASER phasing