7UQU

Crystal Structure of Mouse Cadherin-23 EC9

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	0.2 M Magnesium Chloride 20% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.06	40.41

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.308	α = 90
b = 41.661	β = 114.196
c = 56.908	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2019-06-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 24-ID-C	0.97910	APS	24-ID-C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.976	51.909	97	0.991	13.4	4.2		14817

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.03			0.907	4.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5tfl,5i8d	1.976	51.909	14362	681	95.836	0.182	0.1802	0.2241	24.745

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.676		-0.583	0.461		1.239

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.218
r_dihedral_angle_4_deg	17.085
r_dihedral_angle_3_deg	13.795
r_dihedral_angle_1_deg	8.177
r_lrange_it	6.358
r_lrange_other	6.354
r_scangle_it	4.012
r_scangle_other	4.012
r_mcangle_it	3.721
r_mcangle_other	3.72
r_scbond_other	2.543
r_scbond_it	2.54
r_mcbond_it	2.265
r_mcbond_other	2.256
r_angle_refined_deg	1.486
r_angle_other_deg	1.301
r_nbd_refined	0.198
r_symmetry_nbd_refined	0.193
r_symmetry_nbd_other	0.181
r_metal_ion_refined	0.17
r_xyhbond_nbd_refined	0.161
r_nbtor_refined	0.15
r_nbd_other	0.133
r_symmetry_xyhbond_nbd_refined	0.115
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.058
r_bond_refined_d	0.008
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1617
Nucleic Acid Atoms
Solvent Atoms	73
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing