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DENV1 SLA three-way junction RNA (DenvSLAsh)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1 mM RNA (40-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 2 2D 1H-1H TOCSY 1 mM RNA (40-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 3 2D 1H-1H NOESY 1 mM RNA (40-MER), 10 mM potassium phosphate 95% H2O/5% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 800 4 2D 1H-1H NOESY 1 mM [U-2H] RNA (40-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 5 2D 1H-1H TOCSY 1 mM RNA (40-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 700 6 2D 1H-1H NOESY 1 mM RNA (40-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 700 3 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 peak picking NMRFAM-SPARKY Lee W, Tonelli M, Markley JL 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore