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Apo HMG-CoA Reductase from Arabidopsis thaliana (HMG1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2 M ammonium sulfate,
0.1 M HEPES,
35% w/v poly(acrylic acid sodium salt)2100
Crystal Properties Matthews coefficient Solvent content 1.92 35.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.578 α = 90 b = 85.578 β = 90 c = 266.654 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45.302 100 1 14.8 13.3 39592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.549
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1HW8 1.9 45.302 39555 2031 99.944 0.209 0.2073 0.2123 0.243 0.2454 46.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.981 1.981 -3.962
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.963 r_dihedral_angle_4_deg 16.744 r_dihedral_angle_3_deg 15.161 r_dihedral_angle_1_deg 6.371 r_lrange_it 5.799 r_lrange_other 5.785 r_scangle_it 5.326 r_scangle_other 5.324 r_mcangle_it 4.272 r_mcangle_other 4.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.963 r_dihedral_angle_4_deg 16.744 r_dihedral_angle_3_deg 15.161 r_dihedral_angle_1_deg 6.371 r_lrange_it 5.799 r_lrange_other 5.785 r_scangle_it 5.326 r_scangle_other 5.324 r_mcangle_it 4.272 r_mcangle_other 4.272 r_scbond_it 4.003 r_scbond_other 4.001 r_mcbond_it 3.242 r_mcbond_other 3.239 r_angle_refined_deg 1.357 r_angle_other_deg 1.334 r_nbd_refined 0.184 r_nbd_other 0.183 r_symmetry_nbd_other 0.182 r_symmetry_xyhbond_nbd_refined 0.163 r_nbtor_refined 0.146 r_xyhbond_nbd_refined 0.116 r_symmetry_nbd_refined 0.091 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.062 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2657 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing