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Horse liver alcohol dehydrogenase with NAD and trifluoroethanol at 45 K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AU6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 278 50 MM AMMONIUM N-[TRIS(HYDROXYMETHYL)
METHYL]-2-AMINOETHANE SULFONATE, PH 6.7 (AT 25 C), 0.25 MM EDTA,
10 MG/ML PROTEIN, 1 MM NAD+, 100 MM 2,2,2-TRIFLUOROETHANOL, 12
TO 25 % 2-METHYL-2,4-PENTANEDIOL
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.19 α = 91.9 b = 51.12 β = 103.03 c = 92.46 γ = 109.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 45 CCD ADSC QUANTUM 315r ROSENBAUM ROCK VERTICAL FOCUSINGMIRROR WITH PT, GLASS, PD LANES 2009-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9184 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 19.94 93.6 0.05 0.059 9.8 3.78 281686
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 86.6 0.409 0.476 2.2 3.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7au6 1.1 19.94 277899 2760 93.8 0.1263 0.1261 0.126 0.152 0.1524 RANDOM 14.587
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.25 0.19 0.31 0.21 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_4_deg 13.247 r_dihedral_angle_3_deg 10.942 r_dihedral_angle_1_deg 6.654 r_rigid_bond_restr 2.661 r_angle_refined_deg 1.931 r_angle_other_deg 1.55 r_chiral_restr 0.111 r_bond_refined_d 0.013 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_4_deg 13.247 r_dihedral_angle_3_deg 10.942 r_dihedral_angle_1_deg 6.654 r_rigid_bond_restr 2.661 r_angle_refined_deg 1.931 r_angle_other_deg 1.55 r_chiral_restr 0.111 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5570 Nucleic Acid Atoms Solvent Atoms 904 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PDB_EXTRACT data extraction REFMAC phasing